Quicksand's documentation

Table of content

• Description
  • Workflow
• Quickstart
  • Requirements
  • Run quicksand
  • Troubleshooting
• Installation
  • Requirements
  • Test runability
  • Container Cache
  • Create datastructure
  • Run the pipeline
  • Filter the Results
• Usage
  • Required Flags
  • Optional Flags
  • Profiles
  • Input
  • Run the pipeline
  • Output
• Configuration
  • Config-file
  • Environmental variables
  • Singularity
  • Intermediate files
• quicksand-build
  • Description
  • Workflow
  • Usage
  • Output
• Contribute
• License